Similar HOG based on pairwise relations to

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0794178.1a.8a with 5 members (tRNA-dihydrouridine 20 synthase nad)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini / Hominoidea /

Hominidae /

Completeness score: 1.00

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This HOG has 41 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0794178.1a	813	307	tRNA-dihydrouridine 20 synthase nad
2	HOG:E0794178.1a.8a	526	112	tRNA-dihydrouridine 20 synthase nad
3	HOG:E0801813.10h	211	148	tRNA-dihydrouridine synthase
4	HOG:E0801813.9h	79	100	tRNA-dihydrouridine synthase
5	HOG:E0801813.10l	36	13	tRNA-dihydrouridine synthase
6	HOG:E0801813.10j	22	7	tRNA-dihydrouridine synthase
7	HOG:E0794178.1a.5a	20	4	tRNA-dihydrouridine 20 synthase nad
8	HOG:E0794178.1a.1a	20	4	tRNA-dihydrouridine 20 synthase nad
9	HOG:E0794178.1a.2a	14	5	tRNA-dihydrouridine 20 synthase nad
10	HOG:E0794178	14	311	tRNA-dihydrouridine 20 synthase nad
11	HOG:E0794178.1a.4b	9	2	tRNA-dihydrouridine 20 synthase nad
12	HOG:E0396093	9	45	DUS-like FMN-binding domain-containing protein
13	HOG:E0329271	8	4	DUS-like FMN-binding domain-containing protein
14	HOG:E0086407	8	12	U1-type domain-containing protein
15	HOG:E0801813.8i.12b	6	3	tRNA-dihydrouridine synthase
16	HOG:E0323341	6	2	-
17	HOG:E0801813.6h	5	5	tRNA-dihydrouridine synthase
18	HOG:E0794178.1a.7b	5	1	tRNA-dihydrouridine 20 synthase nad
19	HOG:E0794178.1a.7a	5	1	tRNA-dihydrouridine 20 synthase nad
20	HOG:E0794178.1a.3b	5	1	tRNA-dihydrouridine 20 synthase nad
21	HOG:E0794178.1a.3a	5	1	tRNA-dihydrouridine 20 synthase nad
22	HOG:E0794178.1a.2a.1b	5	1	tRNA-dihydrouridine 20 synthase nad
23	HOG:E0794178.1a.2a.1a	5	1	tRNA-dihydrouridine 20 synthase nad
24	HOG:E0990760.29b	4	1	trna-dihydrouridine synthase
25	HOG:E0990760.20b	4	40	trna-dihydrouridine synthase

Showing 1 to 25 of 41 rows rows per page